Identifier: | run_may |
Element: | /mzML/run/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000857 ! run attribute (children only)
- MS:1000858 ! fraction identifier (value-type=xsd:string)
- MS:1002042 ! modulation time (value-type=xsd:string, units=UO:0000010!second,UO:0000031!minute) - MS:1002084 ! multidimensional chromatography modulation description - MS:1002085 ! two-dimensional gas chromatography with fixed modulation time - MS:1002086 ! two-dimensional gas chromatography with discrete modulation time steps - MS:1002087 ! two-dimensional liquid chromatography with fixed modulation time - MS:1002088 ! two-dimensional liquid chromatography with discrete modulation time steps - MS:1002270 ! chromatography separation - MS:1002271 ! liquid chromatography separation - MS:1002272 ! gas chromatography separation - MS:1002521 ! mass spectrometry imaging |
Identifier: | filecontent_must |
Element: | /mzML/fileDescription/fileContent/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000524 ! data file content (children only, repeatable)
- MS:1000235 ! total ion current chromatogram
- MS:1000294 ! mass spectrum - MS:1000322 ! charge inversion mass spectrum - MS:1000325 ! constant neutral gain spectrum - MS:1000326 ! constant neutral loss spectrum - MS:1000328 ! e/2 mass spectrum - MS:1000341 ! precursor ion spectrum - MS:1000343 ! product ion spectrum (obsolete) - MS:1000579 ! MS1 spectrum - MS:1000789 ! enhanced multiply charged spectrum - MS:1000580 ! MSn spectrum - MS:1000790 ! time-delayed fragmentation spectrum - MS:1000581 ! CRM spectrum - MS:1000582 ! SIM spectrum - MS:1000583 ! SRM spectrum - MS:1000322 ! charge inversion mass spectrum - MS:1000325 ! constant neutral gain spectrum - MS:1000326 ! constant neutral loss spectrum - MS:1000341 ! precursor ion spectrum - MS:1000343 ! product ion spectrum (obsolete) - MS:1000579 ! MS1 spectrum - MS:1000789 ! enhanced multiply charged spectrum - MS:1000580 ! MSn spectrum - MS:1000790 ! time-delayed fragmentation spectrum - MS:1000581 ! CRM spectrum - MS:1000582 ! SIM spectrum - MS:1000583 ! SRM spectrum - MS:1000620 ! PDA spectrum (obsolete) - MS:1000627 ! selected ion current chromatogram - MS:1000628 ! basepeak chromatogram - MS:1000789 ! enhanced multiply charged spectrum - MS:1000790 ! time-delayed fragmentation spectrum - MS:1000804 ! electromagnetic radiation spectrum - MS:1000805 ! emission spectrum - MS:1000806 ! absorption spectrum - MS:1000810 ! mass chromatogram - MS:1000235 ! total ion current chromatogram - MS:1000627 ! selected ion current chromatogram - MS:1000628 ! basepeak chromatogram - MS:1001472 ! selected ion monitoring chromatogram - MS:1001473 ! selected reaction monitoring chromatogram - MS:1001474 ! consecutive reaction monitoring chromatogram (obsolete) - MS:1000811 ! electromagnetic radiation chromatogram - MS:1000812 ! absorption chromatogram - MS:1000813 ! emission chromatogram - MS:1000812 ! absorption chromatogram - MS:1000813 ! emission chromatogram - MS:1001472 ! selected ion monitoring chromatogram - MS:1001473 ! selected reaction monitoring chromatogram - MS:1001474 ! consecutive reaction monitoring chromatogram (obsolete) |
Identifier: | filecontent_may |
Element: | /mzML/fileDescription/fileContent/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000525 ! spectrum representation (children only)
- MS:1000127 ! centroid spectrum
- MS:1000128 ! profile spectrum |
Identifier: | contact_must |
Element: | /mzML/fileDescription/contact/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | MS:1000586 ! contact name (value-type=xsd:string) |
Term: | MS:1000590 ! contact organization (value-type=xsd:string) |
Identifier: | contact_may |
Element: | /mzML/fileDescription/contact/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000585 ! contact person attribute (children only, repeatable)
- MS:1000586 ! contact name (value-type=xsd:string)
- MS:1000587 ! contact address (value-type=xsd:string) - MS:1000588 ! contact URL (value-type=xsd:string) - MS:1000589 ! contact email (value-type=xsd:string) - MS:1000590 ! contact affiliation (value-type=xsd:string) - MS:1001266 ! role type - MS:1001267 ! software vendor - MS:1001268 ! programmer (value-type=xsd:string) - MS:1001269 ! instrument vendor (value-type=xsd:string) - MS:1001270 ! lab personnel (value-type=xsd:string) - MS:1001271 ! researcher - MS:1001755 ! contact phone number (value-type=xsd:string) - MS:1001756 ! contact fax number (value-type=xsd:string) - MS:1001757 ! contact toll-free phone number (value-type=xsd:string) - MS:1002033 ! contact role - MS:1002034 ! first author - MS:1002035 ! senior author - MS:1002036 ! co-author - MS:1002037 ! dataset submitter - MS:1002332 ! lab head |
Identifier: | sourcefile_must |
Element: | /mzML/fileDescription/sourceFileList/sourceFile/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000560 ! mass spectrometer file format (children only)
- MS:1000526 ! Waters raw format
- MS:1000562 ! ABI WIFF format - MS:1000563 ! Thermo RAW format - MS:1000564 ! PSI mzData format - MS:1000565 ! Micromass PKL format - MS:1000566 ! ISB mzXML format - MS:1000567 ! Bruker/Agilent YEP format - MS:1000584 ! mzML format - MS:1000613 ! DTA format - MS:1000614 ! ProteinLynx Global Server mass spectrum XML format - MS:1000740 ! parameter file - MS:1000742 ! Bioworks SRF format - MS:1000815 ! Bruker BAF format - MS:1000816 ! Bruker U2 format - MS:1000825 ! Bruker FID format - MS:1000930 ! Shimadzu Biotech database entity - MS:1001062 ! Mascot MGF format - MS:1001245 ! PerSeptive PKS format - MS:1001246 ! SCIEX API III format - MS:1001247 ! Bruker XML format - MS:1001369 ! text format - MS:1001463 ! Phenyx XML format - MS:1001466 ! MS2 format - MS:1001481 ! SCIEX TOF/TOF database - MS:1001509 ! Agilent MassHunter format - MS:1001527 ! Proteinscape spectra - MS:1001560 ! SCIEX TOF/TOF T2D format - MS:1001881 ! mz5 format - MS:1002302 ! Bruker Container format - MS:1002385 ! SCiLS Lab format - MS:1002441 ! Andi-MS format - MS:1002531 ! UIMF format - MS:1002597 ! MS1 format |
Term: | + MS:1000561 ! data file checksum type (children only, repeatable)
- MS:1000568 ! MD5 (value-type=xsd:string)
- MS:1000569 ! SHA-1 (value-type=xsd:string) |
Term: | + MS:1000767 ! native spectrum identifier format (children only)
- MS:1000768 ! Thermo nativeID format
- MS:1000769 ! Waters nativeID format - MS:1000770 ! WIFF nativeID format - MS:1000771 ! Bruker/Agilent YEP nativeID format - MS:1000772 ! Bruker BAF nativeID format - MS:1000773 ! Bruker FID nativeID format - MS:1000774 ! multiple peak list nativeID format - MS:1000775 ! single peak list nativeID format - MS:1000776 ! scan number only nativeID format - MS:1000777 ! spectrum identifier nativeID format - MS:1000823 ! Bruker U2 nativeID format - MS:1000824 ! no nativeID format - MS:1000929 ! Shimadzu Biotech nativeID format - MS:1001480 ! SCIEX TOF/TOF nativeID format - MS:1001508 ! Agilent MassHunter nativeID format - MS:1001526 ! spectrum from database integer nativeID format - MS:1001528 ! Mascot query number - MS:1001531 ! spectrum from ProteinScape database nativeID format - MS:1001532 ! spectrum from database string nativeID format - MS:1001559 ! SCIEX TOF/TOF T2D nativeID format - MS:1001562 ! Scaffold nativeID format - MS:1002303 ! Bruker Container nativeID format (value-type=xsd:string) - MS:1002532 ! UIMF nativeID format |
Identifier: | sample_may |
Element: | /mzML/sampleList/sample/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000548 ! sample attribute (children only, repeatable)
- MS:1000001 ! sample number (value-type=xsd:string)
- MS:1000002 ! sample name (value-type=xsd:string) - MS:1000003 ! sample state - MS:1000047 ! emulsion - MS:1000048 ! gaseous sample state - MS:1000049 ! liquid sample state - MS:1000050 ! solid sample state - MS:1000051 ! solution - MS:1000052 ! suspension - MS:1000004 ! sample mass (value-type=xsd:decimal, units=UO:0000021!gram) - MS:1000005 ! sample volume (value-type=xsd:decimal, units=UO:0000098!milliliter) - MS:1000006 ! sample concentration (value-type=xsd:decimal, units=UO:0000175!gram per liter) - MS:1000053 ! sample batch (value-type=xsd:string) - MS:1002038 ! unlabeled sample - MS:1002602 ! quantification reagent - MS:1002603 ! ICAT reagent - MS:1002604 ! ICAT heavy reagent - MS:1002605 ! ICAT light reagent - MS:1002606 ! ICPL reagent - MS:1002607 ! ICPL reagent 0 - MS:1002608 ! ICPL reagent 4 - MS:1002609 ! ICPL reagent 6 - MS:1002610 ! ICPL reagent 10 - MS:1002611 ! SILAC reagent - MS:1002612 ! SILAC heavy reagent - MS:1002613 ! SILAC medium reagent - MS:1002614 ! SILAC light reagent - MS:1002615 ! TMT reagent - MS:1002616 ! TMT reagent 126 - MS:1002617 ! TMT reagent 127 - MS:1002618 ! TMT reagent 128 - MS:1002619 ! TMT reagent 129 - MS:1002620 ! TMT reagent 130 - MS:1002621 ! TMT reagent 131 - MS:1002622 ! iTRAQ reagent - MS:1002623 ! iTRAQ reagent 113 - MS:1002624 ! iTRAQ reagent 114 - MS:1002625 ! iTRAQ reagent 115 - MS:1002626 ! iTRAQ reagent 116 - MS:1002627 ! iTRAQ reagent 117 - MS:1002628 ! iTRAQ reagent 118 - MS:1002629 ! iTRAQ reagent 119 - MS:1002630 ! iTRAQ reagent 121 |
Term: | + PATO:0001241 ! quality of an object (children only, repeatable)
- Missing terms, CV not loaded...
|
Term: | + GO:0005575 ! cellular_component (children only, repeatable)
- GO:0005576 ! extracellular
- GO:0005623 ! cell - GO:0005941 ! unlocalized - GO:0008372 ! cellular_component unknown |
Term: | + BTO:0000000 ! brenda source tissue ontology (children only, repeatable)
- Missing terms, CV not loaded...
|
Identifier: | instrumentconfiguration_must |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000031 ! instrument model
- MS:1000121 ! SCIEX instrument model
- MS:1000139 ! 4000 QTRAP - MS:1000143 ! API 150EX - MS:1000144 ! API 150EX Prep - MS:1000145 ! API 2000 - MS:1000146 ! API 3000 - MS:1000147 ! API 4000 - MS:1000186 ! proteomics solution 1 - MS:1000187 ! Q TRAP - MS:1000190 ! QSTAR - MS:1000194 ! SymBiot I - MS:1000195 ! SymBiot XVI - MS:1000651 ! 3200 QTRAP - MS:1000652 ! 4800 Plus MALDI TOF/TOF - MS:1000653 ! API 3200 - MS:1000654 ! API 5000 - MS:1000655 ! QSTAR Elite - MS:1000656 ! QSTAR Pulsar - MS:1000657 ! QSTAR XL - MS:1000870 ! 4000 QTRAP (obsolete) - MS:1000931 ! QTRAP 5500 - MS:1000932 ! TripleTOF 5600 - MS:1001482 ! 5800 TOF/TOF - MS:1002533 ! TripleTOF 6600 - MS:1002577 ! 2000 QTRAP - MS:1002578 ! 2500 QTRAP - MS:1002579 ! 3500 QTRAP - MS:1002580 ! QTRAP 4500 - MS:1002581 ! QTRAP 6500 - MS:1002582 ! QTRAP 6500+ - MS:1002583 ! TripleTOF 4600 - MS:1002584 ! TripleTOF 5600+ - MS:1002585 ! API 100 - MS:1002586 ! API 100LC - MS:1002587 ! API 165 - MS:1002588 ! API 300 - MS:1002589 ! API 350 - MS:1002590 ! API 365 - MS:1002591 ! Triple Quad 3500 - MS:1002592 ! Triple Quad 4500 - MS:1002593 ! Triple Quad 5500 - MS:1002594 ! Triple Quad 6500 - MS:1002595 ! Triple Quad 6500+ - MS:1002674 ! X500R QTOF - MS:1000122 ! Bruker Daltonics instrument model - MS:1000697 ! Bruker Daltonics HCT Series - MS:1000160 ! HCT - MS:1000161 ! HCTplus - MS:1000698 ! HCTultra - MS:1000699 ! HCTultra PTM - MS:1000700 ! HCTultra ETD II - MS:1001533 ! Bruker Daltonics esquire series - MS:1000156 ! esquire 4000 - MS:1000157 ! esquire 6000 - MS:1001534 ! Bruker Daltonics flex series - MS:1000148 ! autoflex II - MS:1000149 ! autoflex TOF/TOF - MS:1000177 ! microflex - MS:1000183 ! OmniFlex - MS:1000201 ! ultraflex - MS:1000202 ! ultraflex TOF/TOF - MS:1000696 ! autoflex III smartbeam - MS:1000701 ! microflex LT - MS:1000705 ! ultraflex III TOF/TOF - MS:1001543 ! microflex LRF - MS:1001544 ! ultrafleXtreme - MS:1001550 ! microflex II - MS:1001553 ! autoflex II TOF/TOF - MS:1001554 ! autoflex III TOF/TOF smartbeam - MS:1001555 ! autoflex - MS:1001535 ! Bruker Daltonics BioTOF series - MS:1000151 ! BioTOF II - MS:1000152 ! BioTOF-Q - MS:1001537 ! BioTOF - MS:1001538 ! BioTOF III - MS:1001539 ! UltroTOF-Q - MS:1001536 ! Bruker Daltonics micrOTOF series - MS:1000178 ! microTOF LC - MS:1000702 ! micrOTOF - MS:1000703 ! micrOTOF-Q - MS:1000704 ! micrOTOF-Q II - MS:1001540 ! micrOTOF II - MS:1002077 ! impact - MS:1002280 ! compact - MS:1002299 ! micrOTOF-Q III - MS:1002666 ! impact II - MS:1002667 ! impact HD - MS:1001545 ! Bruker Daltonics amaZon series - MS:1001542 ! amaZon ETD - MS:1001546 ! amaZon X - MS:1002300 ! amaZon Speed ETD - MS:1002301 ! amaZon Speed - MS:1001547 ! Bruker Daltonics maXis series - MS:1001541 ! maXis - MS:1002279 ! maXis 4G - MS:1001548 ! Bruker Daltonics solarix series - MS:1001549 ! solariX - MS:1001556 ! Bruker Daltonics apex series - MS:1000141 ! apex IV - MS:1000142 ! apex Q - MS:1000695 ! apex ultra - MS:1002293 ! Bruker Daltonics SCION series - MS:1002295 ! SCION SQ - MS:1002296 ! SCION TQ - MS:1002294 ! Bruker Daltonics EVOQ series - MS:1002297 ! EVOQ Elite - MS:1002298 ! EVOQ Qube - MS:1000124 ! Shimadzu instrument model - MS:1000602 ! Shimadzu MALDI-TOF instrument model - MS:1000607 ! AXIMA CFR MALDI-TOF - MS:1000608 ! AXIMA-QIT - MS:1000609 ! AXIMA-CFR plus - MS:1000610 ! AXIMA Performance MALDI-TOF/TOF - MS:1000611 ! AXIMA Confidence MALDI-TOF - MS:1000612 ! AXIMA Assurance Linear MALDI-TOF - MS:1002382 ! Shimadzu MALDI-7090 - MS:1000603 ! Shimadzu Scientific Instruments instrument model - MS:1000604 ! LCMS-IT-TOF - MS:1000605 ! LCMS-2010EV - MS:1000606 ! LCMS-2010A - MS:1000126 ! Waters instrument model - MS:1000150 ! Auto Spec Ultima NT - MS:1000159 ! GCT - MS:1000164 ! IsoPrime - MS:1000165 ! IsoProbe - MS:1000166 ! IsoProbe T - MS:1000170 ! M@LDI L - MS:1000171 ! M@LDI LR - MS:1000180 ! NG-5400 - MS:1000184 ! Platform ICP - MS:1000188 ! Q-Tof micro - MS:1000189 ! Q-Tof Ultima - MS:1000191 ! quattro micro - MS:1000192 ! Quattro Ultima - MS:1000632 ! Q-Tof Premier - MS:1000818 ! Acquity UPLC PDA - MS:1000819 ! Acquity UPLC FLR - MS:1001761 ! ACQUITY UPLC - MS:1001762 ! ACQUITY UPLC H-Class - MS:1001763 ! ACQUITY UPLC H-Class Bio - MS:1001764 ! ACQUITY UPLC I-Class - MS:1001765 ! ACQUITY UPLC Systems with 2D Technology - MS:1001766 ! nanoACQUITY UPLC - MS:1001767 ! nanoACQUITY UPLC System with 1D Technology - MS:1001768 ! nanoACQUITY UPLC with HDX Technology - MS:1001769 ! TRIZAIC UPLC nanoTile - MS:1001770 ! GCT Premier - MS:1001771 ! MALDI Synapt G2 HDMS - MS:1001772 ! MALDI Synapt G2 MS - MS:1001773 ! MALDI Synapt G2-S HDMS - MS:1001774 ! MALDI Synapt G2-S MS - MS:1001775 ! MALDI Synapt HDMS - MS:1001776 ! MALDI Synapt MS - MS:1001777 ! Synapt G2 HDMS - MS:1001778 ! Synapt G2 MS - MS:1001779 ! Synapt G2-S HDMS - MS:1001780 ! Synapt G2-S MS - MS:1001781 ! Synapt HDMS - MS:1001782 ! Synapt MS - MS:1001783 ! Xevo G2 Q-Tof - MS:1001784 ! Xevo G2 Tof - MS:1001785 ! Xevo Q-Tof - MS:1001786 ! 3100 - MS:1001787 ! Acquity SQD - MS:1001788 ! Acquity TQD - MS:1001789 ! Quattro micro GC - MS:1001790 ! Xevo TQ MS - MS:1001791 ! Xevo TQD - MS:1001792 ! Xevo TQ-S - MS:1002274 ! SQ Detector 2 - MS:1002275 ! Xevo G2-S Tof - MS:1002276 ! Xevo G2-S QTof - MS:1002277 ! AutoSpec Premier - MS:1002726 ! SYNAPT G2-Si - MS:1002727 ! MALDI SYNAPT G2-Si - MS:1002728 ! Vion IMS QTof - MS:1002729 ! Xevo G2 XS Tof - MS:1002730 ! Xevo TQ-XS - MS:1002731 ! Xevo TQ-S micro - MS:1000483 ! Thermo Fisher Scientific instrument model - MS:1000125 ! Thermo Finnigan instrument model - MS:1000153 ! DELTA plusAdvantage - MS:1000154 ! DELTAplusXP - MS:1000167 ! LCQ Advantage - MS:1000168 ! LCQ Classic - MS:1000169 ! LCQ Deca XP Plus - MS:1000179 ! neptune - MS:1000185 ! PolarisQ - MS:1000193 ! Surveyor MSQ - MS:1000196 ! TEMPUS TOF - MS:1000197 ! TRACE DSQ - MS:1000198 ! TRITON - MS:1000199 ! TSQ Quantum - MS:1000554 ! LCQ Deca - MS:1000558 ! GC Quantum - MS:1000578 ! LCQ Fleet - MS:1000634 ! DSQ - MS:1000492 ! Thermo Electron instrument model - MS:1000493 ! Finnigan MAT instrument model - MS:1000172 ! MAT253 - MS:1000173 ! MAT900XP - MS:1000174 ! MAT900XP Trap - MS:1000175 ! MAT95XP - MS:1000176 ! MAT95XP Trap - MS:1000748 ! SSQ 7000 - MS:1000749 ! TSQ 7000 - MS:1000750 ! TSQ - MS:1000494 ! Thermo Scientific instrument model - MS:1000447 ! LTQ - MS:1000448 ! LTQ FT - MS:1000449 ! LTQ Orbitrap - MS:1000450 ! LXQ - MS:1000555 ! LTQ Orbitrap Discovery - MS:1000556 ! LTQ Orbitrap XL - MS:1000557 ! LTQ FT Ultra - MS:1000622 ! Surveyor PDA - MS:1000623 ! Accela PDA - MS:1000635 ! ITQ 700 - MS:1000636 ! ITQ 900 - MS:1000637 ! ITQ 1100 - MS:1000638 ! LTQ XL ETD - MS:1000639 ! LTQ Orbitrap XL ETD - MS:1000640 ! DFS - MS:1000641 ! DSQ II - MS:1000642 ! MALDI LTQ XL - MS:1000643 ! MALDI LTQ Orbitrap - MS:1000644 ! TSQ Quantum Access - MS:1000645 ! Element XR - MS:1000646 ! Element 2 - MS:1000647 ! Element GD - MS:1000648 ! GC IsoLink - MS:1000649 ! Exactive - MS:1000743 ! TSQ Quantum Ultra AM - MS:1000751 ! TSQ Quantum Ultra - MS:1000854 ! LTQ XL - MS:1000855 ! LTQ Velos - MS:1000856 ! LTQ Velos ETD - MS:1001510 ! TSQ Vantage - MS:1001742 ! LTQ Orbitrap Velos - MS:1001908 ! ISQ - MS:1001909 ! Velos Plus - MS:1001910 ! LTQ Orbitrap Elite - MS:1001911 ! Q Exactive - MS:1002416 ! Orbitrap Fusion - MS:1002417 ! Orbitrap Fusion ETD - MS:1002418 ! TSQ Quantiva - MS:1002419 ! TSQ Endura - MS:1002523 ! Q Exactive HF - MS:1002525 ! TSQ 8000 Evo - MS:1002526 ! Exactive Plus - MS:1002634 ! Q Exactive Plus - MS:1002732 ! Orbitrap Fusion Lumos - MS:1000488 ! Hitachi instrument model - MS:1000489 ! Varian instrument model - MS:1000123 ! IonSpec instrument model - MS:1000158 ! explorer - MS:1000162 ! HiRes ESI - MS:1000163 ! HiRes MALDI - MS:1000181 ! OMEGA - MS:1000182 ! OMEGA-2001 - MS:1000200 ! ultima - MS:1000490 ! Agilent instrument model - MS:1000467 ! 1200 series LC/MSD SL - MS:1000468 ! 6110 Quadrupole LC/MS - MS:1000469 ! 6120 Quadrupole LC/MS - MS:1000470 ! 6130 Quadrupole LC/MS - MS:1000471 ! 6140 Quadrupole LC/MS - MS:1000472 ! 6210 Time-of-Flight LC/MS - MS:1000473 ! 6310 Ion Trap LC/MS - MS:1000474 ! 6320 Ion Trap LC/MS - MS:1000475 ! 6330 Ion Trap LC/MS - MS:1000476 ! 6340 Ion Trap LC/MS - MS:1000477 ! 6410 Triple Quadrupole LC/MS - MS:1000478 ! 1200 series LC/MSD VL - MS:1000675 ! 6220 Time-of-Flight LC/MS - MS:1000676 ! 6510 Quadrupole Time-of-Flight LC/MS - MS:1000677 ! 6520 Quadrupole Time-of-Flight LC/MS - MS:1002444 ! 6420 Triple Quadrupole LC/MS - MS:1002445 ! 6460 Triple Quadrupole LC/MS - MS:1002446 ! 6490 Triple Quadrupole LC/MS - MS:1000491 ! Dionex instrument model - MS:1000495 ! Applied Biosystems instrument model - MS:1000140 ! 4700 Proteomics Analyzer - MS:1000203 ! Voyager-DE PRO - MS:1000204 ! Voyager-DE STR - MS:1000658 ! 4800 Proteomics Analyzer - MS:1001800 ! LECO instrument model - MS:1001801 ! Pegasus HRT - MS:1001802 ! Citius HRT - MS:1001803 ! Pegasus - MS:1001804 ! TruTOF - MS:1001945 ! Pegasus 4D - MS:1002278 ! Pegasus III - MS:1002719 ! Pegasus BT |
Identifier: | instrumentconfiguration_may |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000496 ! instrument attribute (children only, repeatable)
- MS:1000032 ! customization (value-type=xsd:string)
- MS:1000236 ! transmission (value-type=xsd:decimal) - MS:1000529 ! instrument serial number (value-type=xsd:string) |
Term: | + MS:1000597 ! ion optics type (children only)
- MS:1000221 ! magnetic deflection
- MS:1000246 ! delayed extraction - MS:1000275 ! collision quadrupole - MS:1000281 ! selected ion flow tube - MS:1000286 ! time lag focusing - MS:1000300 ! reflectron - MS:1000307 ! einzel lens - MS:1000309 ! first stability region - MS:1000310 ! fringing field - MS:1000311 ! kinetic energy analyzer - MS:1000320 ! static field |
Term: | + MS:1000487 ! ion optics attribute (children only, repeatable)
- MS:1000216 ! field-free region
- MS:1000304 ! accelerating voltage (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1000308 ! electric field strength (value-type=xsd:decimal, units=UO:0000268!volt per meter) - MS:1000319 ! space charge effect |
Identifier: | source_must |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/componentList/source/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000008 ! ionization type
- MS:1000071 ! chemical ionization
- MS:1000073 ! electrospray ionization - MS:1000397 ! microelectrospray - MS:1000398 ! nanoelectrospray - MS:1000074 ! fast atom bombardment ionization - MS:1000227 ! multiphoton ionization - MS:1000240 ! atmospheric pressure ionization - MS:1000070 ! atmospheric pressure chemical ionization - MS:1000239 ! atmospheric pressure matrix-assisted laser desorption ionization - MS:1000382 ! atmospheric pressure photoionization - MS:1002011 ! desorption electrospray ionization - MS:1000247 ! desorption ionization - MS:1000075 ! matrix-assisted laser desorption ionization - MS:1000257 ! field desorption - MS:1000387 ! desorption/ionization on silicon - MS:1000393 ! laser desorption ionization - MS:1000405 ! surface-assisted laser desorption ionization - MS:1000255 ! flowing afterglow - MS:1000258 ! field ionization - MS:1000259 ! glow discharge ionization - MS:1000271 ! Negative Ion chemical ionization - MS:1000272 ! neutralization reionization mass spectrometry - MS:1000273 ! photoionization - MS:1000274 ! pyrolysis mass spectrometry - MS:1000276 ! resonance enhanced multiphoton ionization - MS:1000380 ! adiabatic ionization - MS:1000381 ! associative ionization - MS:1000383 ! autodetachment - MS:1000384 ! autoionization - MS:1000385 ! charge exchange ionization - MS:1000386 ! chemi-ionization - MS:1000388 ! dissociative ionization - MS:1000389 ! electron ionization - MS:1000395 ! liquid secondary ionization - MS:1000399 ! penning ionization - MS:1000400 ! plasma desorption ionization - MS:1000402 ! secondary ionization - MS:1000403 ! soft ionization - MS:1000404 ! spark ionization - MS:1000406 ! surface ionization - MS:1000278 ! surface enhanced laser desorption ionization - MS:1000279 ! surface enhanced neat desorption - MS:1000407 ! thermal ionization - MS:1000408 ! vertical ionization - MS:1000446 ! fast ion bombardment |
Identifier: | source_may |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/componentList/source/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000007 ! inlet type (children only)
- MS:1000055 ! continuous flow fast atom bombardment
- MS:1000056 ! direct inlet - MS:1000057 ! electrospray inlet - MS:1000485 ! nanospray inlet - MS:1000058 ! flow injection analysis - MS:1000059 ! inductively coupled plasma - MS:1000060 ! infusion - MS:1000061 ! jet separator - MS:1000062 ! membrane separator - MS:1000063 ! moving belt - MS:1000064 ! moving wire - MS:1000065 ! open split - MS:1000066 ! particle beam - MS:1000067 ! reservoir - MS:1000068 ! septum - MS:1000069 ! thermospray inlet - MS:1000248 ! direct insertion probe - MS:1000249 ! direct liquid introduction - MS:1000396 ! membrane inlet |
Term: | + MS:1000482 ! source attribute (children only, repeatable)
- MS:1000392 ! ionization efficiency (value-type=xsd:decimal)
- MS:1000486 ! source potential (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1000875 ! declustering potential (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1000876 ! cone voltage (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1000877 ! tube lens voltage (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1001879 ! offset voltage (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1001913 ! S-lens voltage (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1002040 ! inlet temperature (value-type=xsd:decimal, units=UO:0000012!kelvin,UO:0000027!degree celsius) - MS:1002041 ! source temperature (value-type=xsd:decimal, units=UO:0000012!kelvin,UO:0000027!degree celsius) |
Term: | + MS:1000841 ! laser attribute (children only, repeatable)
- MS:1000843 ! wavelength (obsolete, value-type=xsd:decimal, units=UO:0000018!nanometer)
- MS:1000844 ! focus diameter x (value-type=xsd:decimal, units=UO:0000017!micrometer) - MS:1000845 ! focus diameter y (value-type=xsd:decimal, units=UO:0000017!micrometer) - MS:1000846 ! pulse energy (value-type=xsd:decimal, units=UO:0000112!joule) - MS:1000847 ! pulse duration (value-type=xsd:decimal, units=UO:0000150!nanosecond) - MS:1000848 ! attenuation (value-type=xsd:decimal, units=UO:0000187!percent) - MS:1000849 ! impact angle (value-type=xsd:decimal, units=UO:0000185!degree) |
Term: | + MS:1000842 ! laser type (children only)
- MS:1000850 ! gas laser
- MS:1000851 ! solid-state laser - MS:1000852 ! dye-laser - MS:1000853 ! free electron laser |
Term: | + MS:1000832 ! MALDI matrix application (children only, repeatable)
- MS:1000834 ! matrix solution (value-type=xsd:string)
- MS:1000835 ! matrix solution concentration (value-type=xsd:decimal, units=UO:0000175!gram per liter) |
Term: | + MS:1000833 ! matrix application type (children only)
- MS:1000836 ! dried droplet MALDI matrix preparation
- MS:1000837 ! printed MALDI matrix preparation - MS:1000838 ! sprayed MALDI matrix preparation - MS:1000839 ! precoated MALDI sample plate - MS:1001987 ! vacuum drying MALDI sample preparation - MS:1001988 ! crushed crystal MALDI sample preparation - MS:1001989 ! fast evaporation MALDI sample preparation - MS:1001990 ! overlayer MALDI sample preparation - MS:1001991 ! sandwich MALDI sample preparation - MS:1001992 ! spin coating MALDI sample preparation - MS:1001993 ! quick and dirty MALDI sample preparation |
Identifier: | analyzer_must |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/componentList/analyzer/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000443 ! mass analyzer type
- MS:1000079 ! fourier transform ion cyclotron resonance mass spectrometer
- MS:1000080 ! magnetic sector - MS:1000081 ! quadrupole - MS:1000084 ! time-of-flight - MS:1000254 ! electrostatic energy analyzer - MS:1000264 ! ion trap - MS:1000082 ! quadrupole ion trap - MS:1000291 ! linear ion trap - MS:1000078 ! axial ejection linear ion trap - MS:1000083 ! radial ejection linear ion trap - MS:1000284 ! stored waveform inverse fourier transform - MS:1000288 ! cyclotron - MS:1000484 ! orbitrap |
Identifier: | analyzer_may |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/componentList/analyzer/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000480 ! mass analyzer attribute (children only, repeatable)
- MS:1000014 ! accuracy (value-type=xsd:decimal, units=MS:1000040!m/z,UO:0000169!parts per million)
- MS:1000021 ! reflectron state - MS:1000105 ! reflectron off - MS:1000106 ! reflectron on - MS:1000022 ! TOF Total Path Length (value-type=xsd:decimal, units=UO:0000008!meter) - MS:1000024 ! final MS exponent (value-type=xsd:integer) - MS:1000025 ! magnetic field strength (value-type=xsd:decimal, units=UO:0000228!tesla) |
Identifier: | detector_must |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/componentList/detector/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000026 ! detector type
- MS:1000107 ! channeltron
- MS:1000110 ! daly detector - MS:1000112 ! faraday cup - MS:1000115 ! multi-collector - MS:1000116 ! photomultiplier - MS:1000253 ! electron multiplier - MS:1000111 ! electron multiplier tube - MS:1000345 ! array detector - MS:1000114 ! microchannel plate detector - MS:1000621 ! photodiode array detector - MS:1000818 ! Acquity UPLC PDA - MS:1000346 ! conversion dynode - MS:1000108 ! conversion dynode electron multiplier - MS:1000109 ! conversion dynode photomultiplier - MS:1000347 ! dynode - MS:1000348 ! focal plane collector - MS:1000113 ! focal plane array - MS:1000349 ! ion-to-photon detector - MS:1000350 ! point collector - MS:1000351 ! postacceleration detector - MS:1000624 ! inductive detector - MS:1002308 ! fluorescence detector - MS:1000819 ! Acquity UPLC FLR |
Identifier: | detector_may |
Element: | /mzML/instrumentConfigurationList/instrumentConfiguration/componentList/detector/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000027 ! detector acquisition mode (children only, repeatable)
- MS:1000117 ! analog-digital converter
- MS:1000118 ! pulse counting - MS:1000119 ! time-digital converter - MS:1000120 ! transient recorder |
Term: | + MS:1000481 ! detector attribute (children only, repeatable)
- MS:1000028 ! detector resolution (value-type=xsd:decimal)
- MS:1000029 ! sampling frequency (value-type=xsd:decimal, units=UO:0000106!hertz) - MS:1002273 ! detector potential (value-type=xsd:decimal, units=UO:0000218!volt) |
Identifier: | software_must |
Element: | /mzML/softwareList/software/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000531 ! software (children only)
- MS:1000689 ! Agilent software
- MS:1000678 ! MassHunter Data Acquisition - MS:1000679 ! MassHunter Easy Access - MS:1000680 ! MassHunter Qualitative Analysis - MS:1000681 ! MassHunter Quantitative Analysis - MS:1000682 ! MassHunter Metabolite ID - MS:1000683 ! MassHunter BioConfirm - MS:1000684 ! Genespring MS - MS:1000685 ! MassHunter Mass Profiler - MS:1000686 ! METLIN - MS:1000687 ! Spectrum Mill for MassHunter Workstation - MS:1000688 ! 6300 Series Ion Trap Data Analysis Software - MS:1000690 ! SCIEX software - MS:1000551 ! Analyst - MS:1000659 ! 4000 Series Explorer Software - MS:1000661 ! GPS Explorer - MS:1000662 ! LightSight Software - MS:1000663 ! ProteinPilot Software - MS:1000664 ! TissueView Software - MS:1000665 ! MarkerView Software - MS:1000666 ! MRMPilot Software - MS:1000667 ! BioAnalyst - MS:1000668 ! Pro ID - MS:1000669 ! Pro ICAT - MS:1000670 ! Pro Quant - MS:1000671 ! Pro BLAST - MS:1000672 ! Cliquid - MS:1000673 ! MIDAS Workflow Designer - MS:1000674 ! MultiQuant - MS:1001483 ! SCIEX TOF/TOF Series Explorer Software - MS:1000691 ! Applied Biosystems software - MS:1000536 ! Data Explorer - MS:1000537 ! 4700 Explorer - MS:1000539 ! Voyager Biospectrometry Workstation System - MS:1000692 ! Bruker software - MS:1000535 ! FlexAnalysis - MS:1000540 ! FlexControl - MS:1000706 ! apexControl - MS:1000707 ! BioTools - MS:1000708 ! CLINPROT - MS:1000709 ! CLINPROT micro - MS:1000710 ! CLINPROT robot - MS:1000711 ! ClinProTools - MS:1000712 ! Compass - MS:1000713 ! Compass for HCT/esquire - MS:1000714 ! Compass for micrOTOF - MS:1000715 ! Compass OpenAccess - MS:1000716 ! Compass Security Pack - MS:1000717 ! CompassXport - MS:1000718 ! CompassXtract - MS:1000719 ! DataAnalysis - MS:1000720 ! dpControl - MS:1000721 ! esquireControl - MS:1000722 ! flexImaging - MS:1000723 ! GENOLINK - MS:1000724 ! GenoTools - MS:1000725 ! HCTcontrol - MS:1000726 ! micrOTOFcontrol - MS:1000727 ! PolyTools - MS:1000728 ! ProfileAnalysis - MS:1000729 ! PROTEINEER - MS:1000730 ! PROTEINEER dp - MS:1000731 ! PROTEINEER fc - MS:1000732 ! PROTEINEER spII - MS:1000733 ! PROTEINEER-LC - MS:1000734 ! ProteinScape - MS:1000735 ! PureDisk - MS:1000736 ! QuantAnalysis - MS:1000737 ! spControl - MS:1000738 ! TargetAnalysis - MS:1000739 ! WARP-LC - MS:1000817 ! HyStar - MS:1001487 ! ProteinExtractor - MS:1000693 ! Thermo Finnigan software - MS:1000532 ! Xcalibur - MS:1000533 ! Bioworks - MS:1000650 ! Proteome Discoverer - MS:1001912 ! PinPoint - MS:1000694 ! Waters software - MS:1000534 ! MassLynx - MS:1000601 ! ProteinLynx Global Server - MS:1001795 ! Empower - MS:1001796 ! UNIFY - MS:1000799 ! custom unreleased software tool (value-type=xsd:string) - MS:1000871 ! SRM software - MS:1000872 ! MaRiMba - MS:1000922 ! Skyline - MS:1000923 ! TIQAM - MS:1000925 ! ATAQS - MS:1002220 ! MRMaid - MS:1002410 ! Anubis - MS:1000873 ! peptide attribute calculation software - MS:1000874 ! SSRCalc - MS:1001139 ! quantitation software name - MS:1000739 ! WARP-LC - MS:1000922 ! Skyline - MS:1001488 ! Mascot Distiller - MS:1001583 ! MaxQuant - MS:1001830 ! Progenesis LC-MS - MS:1001831 ! SILACAnalyzer - MS:1001946 ! PEAKS Studio - MS:1001947 ! PEAKS Online - MS:1001948 ! PEAKS Node - MS:1002059 ! Microsoft Excel - MS:1002063 ! FindPairs - MS:1002123 ! x-Tracker - MS:1002124 ! ProteoSuite - MS:1002129 ! ITRAQAnalyzer - MS:1002210 ! IsobariQ - MS:1002410 ! Anubis - MS:1002546 ! Skyline mzQuantML converter - MS:1001455 ! acquisition software - MS:1000532 ! Xcalibur - MS:1000534 ! MassLynx - MS:1000536 ! Data Explorer - MS:1000537 ! 4700 Explorer - MS:1000539 ! Voyager Biospectrometry Workstation System - MS:1000540 ! FlexControl - MS:1000551 ! Analyst - MS:1000659 ! 4000 Series Explorer Software - MS:1000661 ! GPS Explorer - MS:1000678 ! MassHunter Data Acquisition - MS:1000679 ! MassHunter Easy Access - MS:1000688 ! 6300 Series Ion Trap Data Analysis Software - MS:1000706 ! apexControl - MS:1000720 ! dpControl - MS:1000721 ! esquireControl - MS:1000725 ! HCTcontrol - MS:1000726 ! micrOTOFcontrol - MS:1000737 ! spControl - MS:1001483 ! SCIEX TOF/TOF Series Explorer Software - MS:1001558 ! MALDI Solutions - MS:1001878 ! MALDI Solutions Microbial Identification - MS:1001799 ! ChromaTOF software - MS:1001877 ! ChromaTOF HRT software - MS:1001878 ! MALDI Solutions Microbial Identification - MS:1002381 ! MALDI Solutions LC-MALDI - MS:1001456 ! analysis software - MS:1000532 ! Xcalibur - MS:1000533 ! Bioworks - MS:1000534 ! MassLynx - MS:1000535 ! FlexAnalysis - MS:1000536 ! Data Explorer - MS:1000537 ! 4700 Explorer - MS:1000539 ! Voyager Biospectrometry Workstation System - MS:1000551 ! Analyst - MS:1000600 ! Proteios - MS:1000601 ! ProteinLynx Global Server - MS:1000615 ! ProteoWizard software - MS:1002205 ! ProteoWizard msconvert - MS:1002206 ! ProteoWizard idconvert - MS:1002207 ! ProteoWizard chainsaw - MS:1002208 ! ProteoWizard msaccess - MS:1002209 ! ProteoWizard SeeMS - MS:1000650 ! Proteome Discoverer - MS:1000659 ! 4000 Series Explorer Software - MS:1000661 ! GPS Explorer - MS:1000662 ! LightSight Software - MS:1000663 ! ProteinPilot Software - MS:1000664 ! TissueView Software - MS:1000665 ! MarkerView Software - MS:1000666 ! MRMPilot Software - MS:1000667 ! BioAnalyst - MS:1000668 ! Pro ID - MS:1000669 ! Pro ICAT - MS:1000670 ! Pro Quant - MS:1000671 ! Pro BLAST - MS:1000674 ! MultiQuant - MS:1000680 ! MassHunter Qualitative Analysis - MS:1000681 ! MassHunter Quantitative Analysis - MS:1000682 ! MassHunter Metabolite ID - MS:1000683 ! MassHunter BioConfirm - MS:1000684 ! Genespring MS - MS:1000685 ! MassHunter Mass Profiler - MS:1000686 ! METLIN - MS:1000687 ! Spectrum Mill for MassHunter Workstation - MS:1000688 ! 6300 Series Ion Trap Data Analysis Software - MS:1000707 ! BioTools - MS:1000708 ! CLINPROT - MS:1000709 ! CLINPROT micro - MS:1000712 ! Compass - MS:1000713 ! Compass for HCT/esquire - MS:1000714 ! Compass for micrOTOF - MS:1000715 ! Compass OpenAccess - MS:1000719 ! DataAnalysis - MS:1000722 ! flexImaging - MS:1000728 ! ProfileAnalysis - MS:1000734 ! ProteinScape - MS:1000736 ! QuantAnalysis - MS:1000752 ! TOPP software - MS:1000753 ! BaselineFilter - MS:1000754 ! DBExporter - MS:1000755 ! DBImporter - MS:1000756 ! FileConverter - MS:1000757 ! FileFilter - MS:1000758 ! FileMerger - MS:1000759 ! InternalCalibration - MS:1000760 ! MapAligner (obsolete) - MS:1000761 ! MapNormalizer - MS:1000762 ! NoiseFilter (obsolete) - MS:1000763 ! PeakPicker (obsolete) - MS:1000764 ! Resampler - MS:1000765 ! SpectraFilter (obsolete) - MS:1000766 ! TOFCalibration - MS:1001831 ! SILACAnalyzer - MS:1002129 ! ITRAQAnalyzer - MS:1002131 ! TOPP noise filter - MS:1002132 ! TOPP NoiseFilterGaussian - MS:1002133 ! TOPP NoiseFilterSGolay - MS:1002134 ! TOPP peak picker - MS:1002135 ! TOPP PeakPickerHiRes - MS:1002136 ! TOPP PeakPickerWavelet - MS:1002137 ! TOPP spectra filter - MS:1002138 ! TOPP SpectraFilterBernNorm - MS:1002139 ! TOPP SpectraFilterMarkerMower - MS:1002140 ! TOPP SpectraFilterNLargest - MS:1002141 ! TOPP SpectraFilterNormalizer - MS:1002142 ! TOPP SpectraFilterParentPeakMower - MS:1002143 ! TOPP SpectraFilterScaler - MS:1002144 ! TOPP SpectraFilterSqrtMower - MS:1002145 ! TOPP SpectraFilterThresholdMower - MS:1002146 ! TOPP SpectraFilterWindowMower - MS:1002147 ! TOPP map aligner - MS:1002148 ! TOPP MapAlignerIdentification - MS:1002149 ! TOPP MapAlignerPoseClustering - MS:1002150 ! TOPP MapAlignerSpectrum - MS:1002154 ! TOPP DTAExtractor - MS:1002155 ! TOPP IDMerger - MS:1002156 ! TOPP IDFileConverter - MS:1002157 ! TOPP SpectraMerger - MS:1002158 ! TOPP MzTabExporter - MS:1002159 ! TOPP MassTraceExtractor - MS:1002160 ! TOPP PrecursorMassCorrector - MS:1002161 ! TOPP HighResPrecursorMassCorrector - MS:1002162 ! TOPP AdditiveSeries - MS:1002163 ! TOPP Decharger - MS:1002164 ! TOPP EICExtractor - MS:1002165 ! TOPP feature finder - MS:1002166 ! TOPP FeatureFinderCentroided - MS:1002167 ! TOPP FeatureFinderRaw - MS:1002168 ! TOPP FeatureFinderIsotopeWavelet - MS:1002169 ! TOPP FeatureFinderMetabo - MS:1002170 ! TOPP FeatureFinderMRM - MS:1002171 ! TOPP ProteinQuantifier - MS:1002172 ! TOPP ConsensusMapNormalizer - MS:1002173 ! TOPP MapRTTransformer - MS:1002174 ! TOPP feature linker - MS:1002175 ! TOPP FeatureLinkerLabeled - MS:1002176 ! TOPP FeatureLinkerUnlabeled - MS:1002177 ! TOPP FeatureLinkerUnlabeledQT - MS:1002178 ! TOPP CompNovo - MS:1002179 ! TOPP CompNovoCID - MS:1002180 ! TOPP software adaptor - MS:1002181 ! TOPP InspectAdapter - MS:1002182 ! TOPP MascotAdapter - MS:1002183 ! TOPP MascotAdapterOnline - MS:1002184 ! TOPP OMSSAAdapter - MS:1002185 ! TOPP PepNovoAdapter - MS:1002186 ! TOPP XTandemAdapter - MS:1002187 ! TOPP SpecLibSearcher - MS:1002188 ! TOPP ConsensusID - MS:1002189 ! TOPP IDConflictResolver - MS:1002190 ! TOPP IDFilter - MS:1002191 ! TOPP IDMapper - MS:1002192 ! TOPP IDPosteriorErrorProbability - MS:1002193 ! TOPP IDRTCalibration - MS:1002194 ! TOPP PeptideIndexer - MS:1002195 ! TOPP PrecursorIonSelector - MS:1002196 ! TOPP MRMMapper - MS:1002197 ! TOPP OpenSwath component - MS:1002198 ! TOPP OpenSwathAnalyzer - MS:1002199 ! TOPP OpenSwathChromatogramExtractor - MS:1002200 ! TOPP OpenSwathDecoyGenerator - MS:1002201 ! TOPP OpenSwathFeatureXMLToTSV - MS:1002202 ! TOPP OpenSwathRTNormalizer - MS:1002203 ! TOPP ProteinInference - MS:1002204 ! TOPP FalseDiscoveryRate - MS:1002673 ! OpenXQuest - MS:1001207 ! Mascot - MS:1001208 ! SEQUEST - MS:1001209 ! Phenyx - MS:1001461 ! greylag - MS:1001475 ! OMSSA - MS:1001476 ! X\!Tandem - MS:1001477 ! SpectraST - MS:1001478 ! Mascot Parser - MS:1001483 ! SCIEX TOF/TOF Series Explorer Software - MS:1001487 ! ProteinExtractor - MS:1001488 ! Mascot Distiller - MS:1001489 ! Mascot Integra - MS:1001490 ! Percolator - MS:1001558 ! MALDI Solutions - MS:1001878 ! MALDI Solutions Microbial Identification - MS:1001561 ! Scaffold - MS:1001582 ! XCMS - MS:1001583 ! MaxQuant - MS:1001585 ! MyriMatch - MS:1001586 ! DirecTag - MS:1001587 ! TagRecon - MS:1001588 ! Pepitome - MS:1001795 ! Empower - MS:1001796 ! UNIFY - MS:1001799 ! ChromaTOF software - MS:1001877 ! ChromaTOF HRT software - MS:1001878 ! MALDI Solutions Microbial Identification - MS:1001886 ! SQID - MS:1001912 ! PinPoint - MS:1001946 ! PEAKS Studio - MS:1001947 ! PEAKS Online - MS:1001948 ! PEAKS Node - MS:1001973 ! DeBunker - MS:1001977 ! MSQuant - MS:1001984 ! Ascore software - MS:1002043 ! ProteinProspector - MS:1002047 ! MS-GF - MS:1002048 ! MS-GF+ - MS:1002076 ! PAnalyzer - MS:1002210 ! IsobariQ - MS:1002237 ! mzidLib - MS:1002238 ! mzidLib:Omssa2Mzid - MS:1002239 ! mzidLib:Tandem2Mzid - MS:1002240 ! mzidLib:Csv2Mzid - MS:1002241 ! mzidLib:ProteoGrouper - MS:1002242 ! mzidLib:Thresholder - MS:1002243 ! mzidLib:Perform emPAI on mzid - MS:1002244 ! mzidLib:FalseDiscoveryRate - MS:1002245 ! mzidLib:Mzidentml2Csv - MS:1002246 ! mzidLib:CombineSearchEngines - MS:1002247 ! mzidLib:InsertMetaDataFromFasta - MS:1002251 ! Comet - MS:1002261 ! Byonic - MS:1002285 ! Trans-Proteomic Pipeline - MS:1002286 ! Trans-Proteomic Pipeline software - MS:1002287 ! PeptideProphet - MS:1002288 ! iProphet - MS:1002289 ! ProteinProphet - MS:1002290 ! XPRESS - MS:1002291 ! Libra - MS:1002292 ! PTMProphet - MS:1002574 ! ASAPRatio - MS:1002336 ! Amanda - MS:1002337 ! Andromeda - MS:1002342 ! MZmine - MS:1002344 ! Maltcms - MS:1002381 ! MALDI Solutions LC-MALDI - MS:1002384 ! SCiLS Lab - MS:1002387 ! PIA - MS:1002452 ! Maui - MS:1002458 ! PeptideShaker - MS:1002543 ! xiFDR - MS:1002544 ! xi - MS:1002546 ! Skyline mzQuantML converter - MS:1002575 ! Tide - MS:1002596 ! ProLuCID - MS:1002598 ! DTASelect - MS:1002645 ! MSDK - MS:1002661 ! Morpheus - MS:1002720 ! MSPathFinder - MS:1002750 ! NIST MSPepSearch - MS:1001457 ! data processing software - MS:1000532 ! Xcalibur - MS:1000533 ! Bioworks - MS:1000534 ! MassLynx - MS:1000535 ! FlexAnalysis - MS:1000536 ! Data Explorer - MS:1000537 ! 4700 Explorer - MS:1000538 ! massWolf - MS:1000539 ! Voyager Biospectrometry Workstation System - MS:1000541 ! ReAdW - MS:1000542 ! MzStar - MS:1000551 ! Analyst - MS:1000553 ! Trapper - MS:1000591 ! MzWiff - MS:1000600 ! Proteios - MS:1000601 ! ProteinLynx Global Server - MS:1000615 ! ProteoWizard software - MS:1002205 ! ProteoWizard msconvert - MS:1002206 ! ProteoWizard idconvert - MS:1002207 ! ProteoWizard chainsaw - MS:1002208 ! ProteoWizard msaccess - MS:1002209 ! ProteoWizard SeeMS - MS:1000650 ! Proteome Discoverer - MS:1000659 ! 4000 Series Explorer Software - MS:1000661 ! GPS Explorer - MS:1000662 ! LightSight Software - MS:1000663 ! ProteinPilot Software - MS:1000664 ! TissueView Software - MS:1000665 ! MarkerView Software - MS:1000666 ! MRMPilot Software - MS:1000667 ! BioAnalyst - MS:1000668 ! Pro ID - MS:1000669 ! Pro ICAT - MS:1000670 ! Pro Quant - MS:1000671 ! Pro BLAST - MS:1000674 ! MultiQuant - MS:1000680 ! MassHunter Qualitative Analysis - MS:1000681 ! MassHunter Quantitative Analysis - MS:1000682 ! MassHunter Metabolite ID - MS:1000683 ! MassHunter BioConfirm - MS:1000684 ! Genespring MS - MS:1000685 ! MassHunter Mass Profiler - MS:1000686 ! METLIN - MS:1000687 ! Spectrum Mill for MassHunter Workstation - MS:1000688 ! 6300 Series Ion Trap Data Analysis Software - MS:1000707 ! BioTools - MS:1000708 ! CLINPROT - MS:1000709 ! CLINPROT micro - MS:1000712 ! Compass - MS:1000713 ! Compass for HCT/esquire - MS:1000714 ! Compass for micrOTOF - MS:1000715 ! Compass OpenAccess - MS:1000717 ! CompassXport - MS:1000718 ! CompassXtract - MS:1000719 ! DataAnalysis - MS:1000722 ! flexImaging - MS:1000728 ! ProfileAnalysis - MS:1000736 ! QuantAnalysis - MS:1000752 ! TOPP software - MS:1000753 ! BaselineFilter - MS:1000754 ! DBExporter - MS:1000755 ! DBImporter - MS:1000756 ! FileConverter - MS:1000757 ! FileFilter - MS:1000758 ! FileMerger - MS:1000759 ! InternalCalibration - MS:1000760 ! MapAligner (obsolete) - MS:1000761 ! MapNormalizer - MS:1000762 ! NoiseFilter (obsolete) - MS:1000763 ! PeakPicker (obsolete) - MS:1000764 ! Resampler - MS:1000765 ! SpectraFilter (obsolete) - MS:1000766 ! TOFCalibration - MS:1001831 ! SILACAnalyzer - MS:1002129 ! ITRAQAnalyzer - MS:1002131 ! TOPP noise filter - MS:1002132 ! TOPP NoiseFilterGaussian - MS:1002133 ! TOPP NoiseFilterSGolay - MS:1002134 ! TOPP peak picker - MS:1002135 ! TOPP PeakPickerHiRes - MS:1002136 ! TOPP PeakPickerWavelet - MS:1002137 ! TOPP spectra filter - MS:1002138 ! TOPP SpectraFilterBernNorm - MS:1002139 ! TOPP SpectraFilterMarkerMower - MS:1002140 ! TOPP SpectraFilterNLargest - MS:1002141 ! TOPP SpectraFilterNormalizer - MS:1002142 ! TOPP SpectraFilterParentPeakMower - MS:1002143 ! TOPP SpectraFilterScaler - MS:1002144 ! TOPP SpectraFilterSqrtMower - MS:1002145 ! TOPP SpectraFilterThresholdMower - MS:1002146 ! TOPP SpectraFilterWindowMower - MS:1002147 ! TOPP map aligner - MS:1002148 ! TOPP MapAlignerIdentification - MS:1002149 ! TOPP MapAlignerPoseClustering - MS:1002150 ! TOPP MapAlignerSpectrum - MS:1002154 ! TOPP DTAExtractor - MS:1002155 ! TOPP IDMerger - MS:1002156 ! TOPP IDFileConverter - MS:1002157 ! TOPP SpectraMerger - MS:1002158 ! TOPP MzTabExporter - MS:1002159 ! TOPP MassTraceExtractor - MS:1002160 ! TOPP PrecursorMassCorrector - MS:1002161 ! TOPP HighResPrecursorMassCorrector - MS:1002162 ! TOPP AdditiveSeries - MS:1002163 ! TOPP Decharger - MS:1002164 ! TOPP EICExtractor - MS:1002165 ! TOPP feature finder - MS:1002166 ! TOPP FeatureFinderCentroided - MS:1002167 ! TOPP FeatureFinderRaw - MS:1002168 ! TOPP FeatureFinderIsotopeWavelet - MS:1002169 ! TOPP FeatureFinderMetabo - MS:1002170 ! TOPP FeatureFinderMRM - MS:1002171 ! TOPP ProteinQuantifier - MS:1002172 ! TOPP ConsensusMapNormalizer - MS:1002173 ! TOPP MapRTTransformer - MS:1002174 ! TOPP feature linker - MS:1002175 ! TOPP FeatureLinkerLabeled - MS:1002176 ! TOPP FeatureLinkerUnlabeled - MS:1002177 ! TOPP FeatureLinkerUnlabeledQT - MS:1002178 ! TOPP CompNovo - MS:1002179 ! TOPP CompNovoCID - MS:1002180 ! TOPP software adaptor - MS:1002181 ! TOPP InspectAdapter - MS:1002182 ! TOPP MascotAdapter - MS:1002183 ! TOPP MascotAdapterOnline - MS:1002184 ! TOPP OMSSAAdapter - MS:1002185 ! TOPP PepNovoAdapter - MS:1002186 ! TOPP XTandemAdapter - MS:1002187 ! TOPP SpecLibSearcher - MS:1002188 ! TOPP ConsensusID - MS:1002189 ! TOPP IDConflictResolver - MS:1002190 ! TOPP IDFilter - MS:1002191 ! TOPP IDMapper - MS:1002192 ! TOPP IDPosteriorErrorProbability - MS:1002193 ! TOPP IDRTCalibration - MS:1002194 ! TOPP PeptideIndexer - MS:1002195 ! TOPP PrecursorIonSelector - MS:1002196 ! TOPP MRMMapper - MS:1002197 ! TOPP OpenSwath component - MS:1002198 ! TOPP OpenSwathAnalyzer - MS:1002199 ! TOPP OpenSwathChromatogramExtractor - MS:1002200 ! TOPP OpenSwathDecoyGenerator - MS:1002201 ! TOPP OpenSwathFeatureXMLToTSV - MS:1002202 ! TOPP OpenSwathRTNormalizer - MS:1002203 ! TOPP ProteinInference - MS:1002204 ! TOPP FalseDiscoveryRate - MS:1002673 ! OpenXQuest - MS:1001483 ! SCIEX TOF/TOF Series Explorer Software - MS:1001558 ! MALDI Solutions - MS:1001878 ! MALDI Solutions Microbial Identification - MS:1001582 ! XCMS - MS:1001795 ! Empower - MS:1001796 ! UNIFY - MS:1001799 ! ChromaTOF software - MS:1001877 ! ChromaTOF HRT software - MS:1001878 ! MALDI Solutions Microbial Identification - MS:1001886 ! SQID - MS:1001912 ! PinPoint - MS:1001914 ! pymzML - MS:1001946 ! PEAKS Studio - MS:1001947 ! PEAKS Online - MS:1001948 ! PEAKS Node - MS:1002333 ! conversion software - MS:1002334 ! ProCon - MS:1002335 ! PRIDE Converter2 - MS:1002334 ! ProCon - MS:1002335 ! PRIDE Converter2 - MS:1002342 ! MZmine - MS:1002344 ! Maltcms - MS:1002381 ! MALDI Solutions LC-MALDI - MS:1002384 ! SCiLS Lab - MS:1002386 ! preprocessing software - MS:1002387 ! PIA - MS:1002414 ! postprocessing software - MS:1002387 ! PIA - MS:1002452 ! Maui - MS:1002524 ! PepFinder - MS:1002645 ! MSDK - MS:1001557 ! Shimadzu Corporation software - MS:1001558 ! MALDI Solutions - MS:1001878 ! MALDI Solutions Microbial Identification - MS:1002381 ! MALDI Solutions LC-MALDI - MS:1001798 ! LECO software - MS:1001799 ! ChromaTOF software - MS:1001877 ! ChromaTOF HRT software - MS:1001949 ! BSI software - MS:1002383 ! SCiLS software - MS:1002384 ! SCiLS Lab |
Identifier: | processingmethod_must |
Element: | /mzML/dataProcessingList/dataProcessing/processingMethod/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000452 ! data transformation (children only, repeatable)
- MS:1000530 ! file format conversion
- MS:1000544 ! Conversion to mzML - MS:1000545 ! Conversion to mzXML - MS:1000546 ! Conversion to mzData - MS:1000741 ! Conversion to dta - MS:1000543 ! data processing action - MS:1000033 ! deisotoping - MS:1000034 ! charge deconvolution - MS:1000035 ! peak picking - MS:1000801 ! area peak picking - MS:1001998 ! sophisticated numerical annotation procedure - MS:1000802 ! height peak picking - MS:1000592 ! smoothing - MS:1000782 ! Savitzky-Golay smoothing - MS:1000783 ! LOWESS smoothing - MS:1000784 ! Gaussian smoothing - MS:1000785 ! moving average smoothing - MS:1001997 ! wavelet transformation smoothing - MS:1000593 ! baseline reduction - MS:1001994 ! top hat baseline reduction - MS:1001995 ! convex hull baseline reduction - MS:1001996 ! median baseline reduction - MS:1000745 ! retention time alignment - MS:1000778 ! charge state calculation - MS:1000779 ! below precursor intensity dominance charge state calculation - MS:1000780 ! precursor recalculation - MS:1000781 ! msPrefix precursor recalculation - MS:1001484 ! intensity normalization - MS:1001999 ! area normalization - MS:1001485 ! m/z calibration - MS:1001486 ! data filtering - MS:1000594 ! low intensity data point removal - MS:1000746 ! high intensity data point removal |
Identifier: | processingmethod_may |
Element: | /mzML/dataProcessingList/dataProcessing/processingMethod/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000630 ! data processing parameter (children only, repeatable)
- MS:1000629 ! low intensity threshold (value-type=xsd:decimal, units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit)
- MS:1000631 ! high intensity threshold (value-type=xsd:decimal, units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit) - MS:1000747 ! completion time (value-type=xsd:date) - MS:1000787 ! inclusive low intensity threshold (value-type=xsd:decimal, units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit) - MS:1000788 ! inclusive high intensity threshold (value-type=xsd:decimal, units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit) - MS:1001885 ! command-line parameters (value-type=xsd:string) - MS:1002435 ! data processing start time (value-type=xsd:date) |
Identifier: | spectrum_must |
Element: | /mzML/run/spectrumList/spectrum/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000559 ! spectrum type (children only)
- MS:1000294 ! mass spectrum
- MS:1000322 ! charge inversion mass spectrum - MS:1000325 ! constant neutral gain spectrum - MS:1000326 ! constant neutral loss spectrum - MS:1000328 ! e/2 mass spectrum - MS:1000341 ! precursor ion spectrum - MS:1000343 ! product ion spectrum (obsolete) - MS:1000579 ! MS1 spectrum - MS:1000789 ! enhanced multiply charged spectrum - MS:1000580 ! MSn spectrum - MS:1000790 ! time-delayed fragmentation spectrum - MS:1000581 ! CRM spectrum - MS:1000582 ! SIM spectrum - MS:1000583 ! SRM spectrum - MS:1000620 ! PDA spectrum (obsolete) - MS:1000804 ! electromagnetic radiation spectrum - MS:1000805 ! emission spectrum - MS:1000806 ! absorption spectrum - MS:1000928 ! calibration spectrum |
Term: | + MS:1000525 ! spectrum representation
- MS:1000127 ! centroid spectrum
- MS:1000128 ! profile spectrum |
Identifier: | spectrum_may |
Element: | /mzML/run/spectrumList/spectrum/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000499 ! spectrum attribute (children only, repeatable)
- MS:1000285 ! total ion current (value-type=xsd:decimal)
- MS:1000497 ! zoom scan - MS:1000504 ! base peak m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000505 ! base peak intensity (value-type=xsd:decimal, units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit) - MS:1000511 ! ms level (value-type=xsd:integer) - MS:1000527 ! highest observed m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000528 ! lowest observed m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000618 ! highest observed wavelength (value-type=xsd:decimal, units=UO:0000018!nanometer) - MS:1000619 ! lowest observed wavelength (value-type=xsd:decimal, units=UO:0000018!nanometer) - MS:1000796 ! spectrum title (value-type=xsd:string) - MS:1000797 ! peak list scans (value-type=xsd:string) - MS:1000798 ! peak list raw scans (value-type=xsd:string) |
Term: | + MS:1000465 ! scan polarity (children only)
- MS:1000129 ! negative scan
- MS:1000130 ! positive scan |
Identifier: | scan_must |
Element: | /mzML/run/spectrumList/spectrum/scanList/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000570 ! spectra combination (children only)
- MS:1000571 ! sum of spectra
- MS:1000573 ! median of spectra - MS:1000575 ! mean of spectra - MS:1000795 ! no combination |
Identifier: | scan_may |
Element: | /mzML/run/spectrumList/spectrum/scanList/scan/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000503 ! scan attribute (children only, repeatable)
- MS:1000011 ! mass resolution (value-type=xsd:string)
- MS:1000015 ! scan rate (value-type=xsd:decimal, units=MS:1000807!Th/s) - MS:1000016 ! scan start time (value-type=xsd:decimal, units=UO:0000010!second,UO:0000031!minute) - MS:1000502 ! dwell time (value-type=xsd:decimal, units=UO:0000010!second,UO:0000031!minute) - MS:1000512 ! filter string (value-type=xsd:string) - MS:1000616 ! preset scan configuration (value-type=xsd:string) - MS:1000800 ! mass resolving power (value-type=xsd:string) - MS:1000803 ! analyzer scan offset (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000826 ! elution time (value-type=xsd:decimal, units=UO:0000010!second,UO:0000031!minute) - MS:1000880 ! interchannel delay (value-type=xsd:decimal, units=UO:0000010!second) - MS:1000927 ! ion injection time (value-type=xsd:decimal, units=UO:0000028!millisecond) - MS:1001581 ! FAIMS compensation voltage - MS:1002082 ! first column elution time (value-type=xsd:decimal, units=UO:0000010!second,UO:0000031!minute) - MS:1002083 ! second column elution time (value-type=xsd:decimal, units=UO:0000010!second,UO:0000031!minute) - MS:1002476 ! ion mobility drift time (value-type=xsd:decimal, units=UO:0000028!millisecond) - MS:1002527 ! instrument specific scan attribute - MS:1002528 ! synchronous prefilter selection |
Term: | + MS:1000018 ! scan direction (children only)
- MS:1000092 ! decreasing m/z scan
- MS:1000093 ! increasing m/z scan |
Term: | + MS:1000019 ! scan law (children only)
- MS:1000094 ! exponential
- MS:1000095 ! linear (obsolete) - MS:1000096 ! quadratic |
Identifier: | scanwindow_must |
Element: | /mzML/run/spectrumList/spectrum/scanList/scan/scanWindowList/scanWindow/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | MS:1000500 ! scan window upper limit (value-type=xsd:decimal, units=MS:1000040!m/z) |
Term: | MS:1000501 ! scan window lower limit (value-type=xsd:decimal, units=MS:1000040!m/z) |
Identifier: | scanwindow_may |
Element: | /mzML/run/spectrumList/spectrum/scanList/scan/scanWindowList/scanWindow/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000549 ! selection window attribute (children only, repeatable)
- MS:1000500 ! scan window upper limit (value-type=xsd:decimal, units=MS:1000040!m/z)
- MS:1000501 ! scan window lower limit (value-type=xsd:decimal, units=MS:1000040!m/z) |
Identifier: | precursor_selectedion_must |
Element: | /mzML/run/spectrumList/spectrum/precursorList/precursor/selectedIonList/selectedIon/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000455 ! ion selection attribute (children only, repeatable)
- MS:1000041 ! charge state (value-type=xsd:integer)
- MS:1000042 ! peak intensity (value-type=xsd:decimal, units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit) - MS:1000633 ! possible charge state (value-type=xsd:integer) - MS:1000744 ! selected ion m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000906 ! peak intensity rank (value-type=xsd:positiveInteger) - MS:1000907 ! peak targeting suitability rank (value-type=xsd:positiveInteger) - MS:1002222 ! SRM transition attribute - MS:1001967 ! product ion drift time (obsolete, value-type=xsd:decimal, units=UO:0000028!millisecond) - MS:1002223 ! precursor ion detection probability (value-type=xsd:decimal) - MS:1002224 ! product ion detection probability (value-type=xsd:decimal) - MS:1002227 ! number of product ion observations (value-type=xsd:integer) - MS:1002228 ! number of precursor ion observations (value-type=xsd:integer) - MS:1002234 ! selected precursor m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1002476 ! ion mobility drift time (value-type=xsd:decimal, units=UO:0000028!millisecond) |
Identifier: | precursor_activation_must |
Element: | /mzML/run/spectrumList/spectrum/precursorList/precursor/activation/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000044 ! dissociation method (repeatable)
- MS:1000133 ! collision-induced dissociation
- MS:1000422 ! beam-type collision-induced dissociation - MS:1002481 ! higher energy beam-type collision-induced dissociation - MS:1002678 ! supplemental beam-type collision-induced dissociation - MS:1002472 ! trap-type collision-induced dissociation - MS:1002679 ! supplemental collision-induced dissociation - MS:1000134 ! plasma desorption - MS:1000135 ! post-source decay - MS:1000136 ! surface-induced dissociation - MS:1000242 ! blackbody infrared radiative dissociation - MS:1000250 ! electron capture dissociation - MS:1000262 ! infrared multiphoton dissociation - MS:1000282 ! sustained off-resonance irradiation - MS:1000433 ! low-energy collision-induced dissociation - MS:1000435 ! photodissociation - MS:1000598 ! electron transfer dissociation - MS:1000599 ! pulsed q dissociation - MS:1001880 ! in-source collision-induced dissociation - MS:1002000 ! LIFT - MS:1002631 ! Electron-Transfer/Higher-Energy Collision Dissociation (EThcD) |
Identifier: | precursor_activation_may |
Element: | /mzML/run/spectrumList/spectrum/precursorList/precursor/activation/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000510 ! precursor activation attribute (children only, repeatable)
- MS:1000045 ! collision energy (value-type=xsd:decimal, units=UO:0000266!electronvolt)
- MS:1002013 ! collision energy ramp start (value-type=xsd:decimal, units=UO:0000266!electronvolt) - MS:1002014 ! collision energy ramp end (value-type=xsd:decimal, units=UO:0000266!electronvolt) - MS:1000138 ! normalized collision energy (value-type=xsd:decimal, units=UO:0000187!percent) - MS:1002218 ! percent collision energy ramp start (value-type=xsd:decimal, units=UO:0000187!percent) - MS:1002219 ! percent collision energy ramp end (value-type=xsd:decimal, units=UO:0000187!percent) - MS:1000245 ! charge stripping - MS:1000412 ! buffer gas (value-type=xsd:string) - MS:1000419 ! collision gas (value-type=xsd:string) - MS:1000509 ! activation energy (value-type=xsd:decimal, units=UO:0000266!electronvolt) - MS:1000869 ! collision gas pressure (value-type=xsd:decimal, units=UO:0000110!pascal) - MS:1001944 ! Collision cell exit potential (value-type=xsd:decimal, units=UO:0000218!volt) - MS:1002680 ! supplemental collision energy (value-type=xsd:decimal, units=UO:0000266!electronvolt) |
Identifier: | precursor_isolationwindow_may |
Element: | /mzML/run/spectrumList/spectrum/precursorList/precursor/isolationWindow/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | AND |
Term: | + MS:1000792 ! isolation window attribute (children only, repeatable)
- MS:1000793 ! isolation window upper limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z)
- MS:1000794 ! isolation window lower limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000827 ! isolation window target m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000828 ! isolation window lower offset (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000829 ! isolation window upper offset (value-type=xsd:decimal, units=MS:1000040!m/z) |
Identifier: | product_isolationwindow_may |
Element: | /mzML/run/spectrumList/spectrum/productList/product/isolationWindow/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | AND |
Term: | + MS:1000792 ! isolation window attribute (children only, repeatable)
- MS:1000793 ! isolation window upper limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z)
- MS:1000794 ! isolation window lower limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000827 ! isolation window target m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000828 ! isolation window lower offset (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000829 ! isolation window upper offset (value-type=xsd:decimal, units=MS:1000040!m/z) |
Identifier: | spectrum_binarydataarray_must |
Element: | /mzML/run/spectrumList/spectrum/binaryDataArrayList/binaryDataArray/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000513 ! binary data array (children only)
- MS:1000514 ! m/z array (units=MS:1000040!m/z, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float)
- MS:1000515 ! intensity array (units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000516 ! charge array (binary-array-types=MS:1000519!32-bit integer) - MS:1000517 ! signal to noise array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000595 ! time array (units=UO:0000010!second,UO:0000031!minute, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000617 ! wavelength array (units=UO:0000018!nanometer, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000786 ! non-standard data array (value-type=xsd:string, binary-array-types=MS:1000519!32-bit integer,MS:1000521!32-bit float,MS:1000522!64-bit integer,MS:1000523!64-bit float,MS:1001479!null-terminated ASCII string) - MS:1000820 ! flow rate array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000821 ! pressure array (units=UO:0000110!pascal, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000822 ! temperature array (units=UO:0000012!kelvin, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002477 ! mean drift time array (value-type=xsd:decimal, units=UO:0000010!second,UO:0000028!millisecond) - MS:1002478 ! mean charge array (binary-array-types=MS:1000521!32-bit float) - MS:1002529 ! resolution array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002530 ! baseline array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002742 ! noise array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002743 ! sampled noise m/z array (units=MS:1000040!m/z, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002744 ! sampled noise intensity array (units=MS:1000131!number of detector counts, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002745 ! sampled noise baseline array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) |
Term: | + MS:1000518 ! binary data type (children only)
- MS:1000519 ! 32-bit integer
- MS:1000520 ! 16-bit float (obsolete) - MS:1000521 ! 32-bit float - MS:1000522 ! 64-bit integer - MS:1000523 ! 64-bit float - MS:1001479 ! null-terminated ASCII string |
Term: | + MS:1000572 ! binary data compression type (children only)
- MS:1000574 ! zlib compression
- MS:1000576 ! no compression - MS:1002312 ! MS-Numpress linear prediction compression - MS:1002313 ! MS-Numpress positive integer compression - MS:1002314 ! MS-Numpress short logged float compression - MS:1002746 ! MS-Numpress linear prediction compression followed by zlib compression - MS:1002747 ! MS-Numpress positive integer compression followed by zlib compression - MS:1002748 ! MS-Numpress short logged float compression followed by zlib compression |
Identifier: | chromatogram_must |
Element: | /mzML/run/chromatogramList/chromatogram/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000626 ! chromatogram type (children only)
- MS:1000810 ! mass chromatogram
- MS:1000235 ! total ion current chromatogram - MS:1000627 ! selected ion current chromatogram - MS:1000628 ! basepeak chromatogram - MS:1001472 ! selected ion monitoring chromatogram - MS:1001473 ! selected reaction monitoring chromatogram - MS:1001474 ! consecutive reaction monitoring chromatogram (obsolete) - MS:1000811 ! electromagnetic radiation chromatogram - MS:1000812 ! absorption chromatogram - MS:1000813 ! emission chromatogram |
Identifier: | chromatogram_may |
Element: | /mzML/run/chromatogramList/chromatogram/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | OR |
Term: | + MS:1000808 ! chromatogram attribute (children only, repeatable)
- MS:1000129 ! negative scan
- MS:1000130 ! positive scan - MS:1000527 ! highest observed m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000528 ! lowest observed m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000618 ! highest observed wavelength (value-type=xsd:decimal, units=UO:0000018!nanometer) - MS:1000619 ! lowest observed wavelength (value-type=xsd:decimal, units=UO:0000018!nanometer) - MS:1000809 ! chromatogram title (value-type=xsd:string) |
Identifier: | chromatogram_precursor_isolationwindow_may |
Element: | /mzML/run/chromatogramList/chromatogram/precursor/isolationWindow/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | AND |
Term: | + MS:1000792 ! isolation window attribute (children only, repeatable)
- MS:1000793 ! isolation window upper limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z)
- MS:1000794 ! isolation window lower limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000827 ! isolation window target m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000828 ! isolation window lower offset (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000829 ! isolation window upper offset (value-type=xsd:decimal, units=MS:1000040!m/z) |
Identifier: | chromatogram_product_isolationwindow_may |
Element: | /mzML/run/chromatogramList/chromatogram/product/isolationWindow/cvParam/@accession |
Requirement level: | MAY |
Combination logic: | AND |
Term: | + MS:1000792 ! isolation window attribute (children only, repeatable)
- MS:1000793 ! isolation window upper limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z)
- MS:1000794 ! isolation window lower limit (obsolete, value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000827 ! isolation window target m/z (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000828 ! isolation window lower offset (value-type=xsd:decimal, units=MS:1000040!m/z) - MS:1000829 ! isolation window upper offset (value-type=xsd:decimal, units=MS:1000040!m/z) |
Identifier: | chromatogram_binarydataarray_must |
Element: | /mzML/run/chromatogramList/chromatogram/binaryDataArrayList/binaryDataArray/cvParam/@accession |
Requirement level: | MUST |
Combination logic: | AND |
Term: | + MS:1000513 ! binary data array (children only)
- MS:1000514 ! m/z array (units=MS:1000040!m/z, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float)
- MS:1000515 ! intensity array (units=MS:1000131!number of detector counts,MS:1000132!percent of base peak,MS:1000814!counts per second,MS:1000905!percent of base peak times 100,UO:0000269!absorbance unit, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000516 ! charge array (binary-array-types=MS:1000519!32-bit integer) - MS:1000517 ! signal to noise array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000595 ! time array (units=UO:0000010!second,UO:0000031!minute, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000617 ! wavelength array (units=UO:0000018!nanometer, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000786 ! non-standard data array (value-type=xsd:string, binary-array-types=MS:1000519!32-bit integer,MS:1000521!32-bit float,MS:1000522!64-bit integer,MS:1000523!64-bit float,MS:1001479!null-terminated ASCII string) - MS:1000820 ! flow rate array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000821 ! pressure array (units=UO:0000110!pascal, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1000822 ! temperature array (units=UO:0000012!kelvin, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002477 ! mean drift time array (value-type=xsd:decimal, units=UO:0000010!second,UO:0000028!millisecond) - MS:1002478 ! mean charge array (binary-array-types=MS:1000521!32-bit float) - MS:1002529 ! resolution array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002530 ! baseline array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002742 ! noise array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002743 ! sampled noise m/z array (units=MS:1000040!m/z, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002744 ! sampled noise intensity array (units=MS:1000131!number of detector counts, binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) - MS:1002745 ! sampled noise baseline array (binary-array-types=MS:1000521!32-bit float,MS:1000523!64-bit float) |
Term: | + MS:1000518 ! binary data type (children only)
- MS:1000519 ! 32-bit integer
- MS:1000520 ! 16-bit float (obsolete) - MS:1000521 ! 32-bit float - MS:1000522 ! 64-bit integer - MS:1000523 ! 64-bit float - MS:1001479 ! null-terminated ASCII string |
Term: | + MS:1000572 ! binary data compression type (children only)
- MS:1000574 ! zlib compression
- MS:1000576 ! no compression - MS:1002312 ! MS-Numpress linear prediction compression - MS:1002313 ! MS-Numpress positive integer compression - MS:1002314 ! MS-Numpress short logged float compression - MS:1002746 ! MS-Numpress linear prediction compression followed by zlib compression - MS:1002747 ! MS-Numpress positive integer compression followed by zlib compression - MS:1002748 ! MS-Numpress short logged float compression followed by zlib compression |