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## Notes on the CAAP Evaluation Script  ##
##                                      ##
## The script is used as follows (in R) ##
##########################################

## Get the function definitions from eval.R
source("eval.R")


## Define ground truth file and alignment tool result file
  
  ## e.g. the M1 data set ground truth 
  
  gt <- '/data/M1_ground_truth.dat'  
  
  ## alignment tool result (space separated : intensity_feat_1 rt_feat_1 mz_feat_1 intensity_feat_2 rt_feat_2 mz_feat_2 intensity_feat_3 ..."
  
  tool <- '/data/my_tool_result.dat' 


## Evaluate
res <- eval(gt,tool)

## Print the results
cat("Recall : ", res$recall,"\n") 
cat("Precision : ", res$precision,"\n")